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using colcounter_summary(), colcounter_summary_pct(),
colcounter_summary_cum(), colcounter_summary_cum_pct()
For another view and text explanations of the findings, see
count_sites_with_n_high_scores()"><meta property="og:description" content="This wraps 4 functions to return 4 tables:
using colcounter_summary(), colcounter_summary_pct(),
colcounter_summary_cum(), colcounter_summary_cum_pct()
For another view and text explanations of the findings, see
count_sites_with_n_high_scores()"><meta property="og:image" content="https://usepa.github.io/EJAM/logo.svg"></head><body>
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  <main id="main" class="col-md-9"><div class="page-header">
      <img src="../logo.svg" class="logo" alt=""><h1>Summarize count (and percent) of rows with exactly (and at least) N cols &gt;= various thresholds</h1>
      <small class="dont-index">Source: <a href="https://github.com/USEPA/EJAM/blob/HEAD/R/colcounter_xyz.R" class="external-link"><code>R/colcounter_xyz.R</code></a></small>
      <div class="d-none name"><code>colcounter_summary_all.Rd</code></div>
    </div>

    <div class="ref-description section level2">
    <p>This wraps 4 functions to return 4 tables:
using <code><a href="colcounter_summary.html">colcounter_summary()</a></code>, <code><a href="colcounter_summary_pct.html">colcounter_summary_pct()</a></code>,
<code><a href="colcounter_summary_cum.html">colcounter_summary_cum()</a></code>, <code><a href="colcounter_summary_cum_pct.html">colcounter_summary_cum_pct()</a></code>
For another view and text explanations of the findings, see
<code><a href="count_sites_with_n_high_scores.html">count_sites_with_n_high_scores()</a></code></p>
    </div>

    <div class="section level2">
    <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">colcounter_summary_all</span><span class="op">(</span><span class="va">x</span>, <span class="va">thresholdlist</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
    </div>

    <div class="section level2">
    <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>


<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
<dd><p>Data.frame or matrix of numbers to be compared to threshold value,
like percentiles for example.</p></dd>


<dt id="arg-thresholdlist">thresholdlist<a class="anchor" aria-label="anchor" href="#arg-thresholdlist"></a></dt>
<dd><p>vector of numeric threshold values to compare to</p></dd>


<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
<dd><p>passed to the 4 functions
like or.tied=TRUE, na.rm=TRUE, below=FALSE, one.cut.per.col=FALSE</p></dd>

</dl></div>
    <div class="section level2">
    <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
    <p>A table of cumulative frequency counts etc., including
count, cum, pct, cum_pct</p>
    </div>
    <div class="section level2">
    <h2 id="see-also">See also<a class="anchor" aria-label="anchor" href="#see-also"></a></h2>
    <div class="dont-index"><p><code>colcounter_summary_all()</code> <code><a href="colcounter_summary.html">colcounter_summary()</a></code> <code><a href="colcounter_summary_cum.html">colcounter_summary_cum()</a></code> <code><a href="colcounter_summary_pct.html">colcounter_summary_pct()</a></code> <code><a href="colcounter_summary_cum_pct.html">colcounter_summary_cum_pct()</a></code></p></div>
    </div>

    <div class="section level2">
    <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
    <div class="sourceCode"><pre class="sourceCode r"><code><span>    <span class="co"># df &lt;-  bg22[ , names.ej.pctile]</span></span>
<span> <span class="va">df</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span>a<span class="op">=</span><span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">80</span>,<span class="fl">4</span><span class="op">)</span>,b<span class="op">=</span><span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">93</span>,<span class="fl">4</span><span class="op">)</span>, col3<span class="op">=</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">49</span>,<span class="fl">98</span>,<span class="fl">100</span>,<span class="fl">100</span><span class="op">)</span><span class="op">)</span></span>
<span> <span class="va">bench</span> <span class="op">&lt;-</span> <span class="fl">5</span> <span class="op">*</span> <span class="op">(</span><span class="fl">0</span><span class="op">:</span><span class="fl">20</span><span class="op">)</span></span>
<span> <span class="va">a3</span> <span class="op">&lt;-</span> <span class="fu">colcounter_summary_all</span><span class="op">(</span><span class="va">df</span>, <span class="va">bench</span><span class="op">)</span></span>
<span> <span class="va">a3</span><span class="op">[</span>,<span class="st">'95'</span>,<span class="op">]</span></span>
<span> <span class="va">a3</span><span class="op">[</span>,,<span class="st">'cum_pct'</span><span class="op">]</span></span>
<span> <span class="va">a3</span><span class="op">[</span><span class="st">'0'</span>,,<span class="op">]</span>; <span class="va">a3</span><span class="op">[</span><span class="fl">1</span>,,<span class="op">]</span></span>
<span> <span class="va">a3</span><span class="op">[</span><span class="fu"><a href="https://rdrr.io/r/base/dim.html" class="external-link">dim</a></span><span class="op">(</span><span class="va">a3</span><span class="op">)</span><span class="op">[</span><span class="fl">1</span><span class="op">]</span>,,<span class="op">]</span></span>
<span> <span class="co"># a3['12',,]; a3[13,,]</span></span>
<span> </span>
<span> <span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span> <span class="co"># \dontrun{</span></span>
<span> <span class="fu"><a href="https://rdrr.io/r/graphics/barplot.html" class="external-link">barplot</a></span><span class="op">(</span><span class="fu"><a href="colcounter_summary_cum_pct.html">colcounter_summary_cum_pct</a></span><span class="op">(</span><span class="va">pdata</span>, <span class="va">pcuts</span><span class="op">)</span><span class="op">[</span> , <span class="st">'80'</span><span class="op">]</span>,</span>
<span>    ylab<span class="op">=</span><span class="st">'% of places'</span>, xlab<span class="op">=</span><span class="st">'# of indicators at/above threshold'</span>,</span>
<span>    main<span class="op">=</span><span class="st">'% of places with at least N/12 indicators &gt;=80th percentile'</span><span class="op">)</span></span>
<span></span>
<span> <span class="fu"><a href="https://rdrr.io/r/graphics/barplot.html" class="external-link">barplot</a></span><span class="op">(</span><span class="fu"><a href="colcounter_summary.html">colcounter_summary</a></span><span class="op">(</span><span class="va">pdata</span>, <span class="va">pcuts</span><span class="op">)</span><span class="op">[</span><span class="fl">2</span><span class="op">:</span><span class="fl">13</span> , <span class="st">'95'</span><span class="op">]</span>,</span>
<span>    ylab<span class="op">=</span><span class="st">'# of places'</span>, xlab<span class="op">=</span><span class="st">'# of indicators at/above threshold'</span>,</span>
<span>    main<span class="op">=</span><span class="st">'# of places with exactly N/12 indicators &gt;=95th percentile'</span><span class="op">)</span></span>
<span></span>
<span>  <span class="co"># pdata &lt;- ejscreen package file bg22[ , names.e.pctile]</span></span>
<span>  <span class="fu"><a href="colcounter_summary_cum_pct.html">colcounter_summary_cum_pct</a></span><span class="op">(</span><span class="va">pdata</span>,<span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">50</span>,<span class="fl">80</span>,<span class="fl">90</span>,<span class="fl">95</span><span class="op">)</span><span class="op">)</span></span>
<span>  <span class="va">xs</span> <span class="op">&lt;-</span> <span class="fl">1</span><span class="op">:</span><span class="fl">12</span></span>
<span>  <span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span>x<span class="op">=</span><span class="va">xs</span>, y<span class="op">=</span><span class="fu"><a href="colcounter_summary_cum_pct.html">colcounter_summary_cum_pct</a></span><span class="op">(</span><span class="va">pdata</span>, <span class="fl">50</span><span class="op">)</span><span class="op">[</span><span class="va">xs</span><span class="op">+</span><span class="fl">1</span><span class="op">]</span>,</span>
<span>   type<span class="op">=</span><span class="st">'b'</span>, col<span class="op">=</span><span class="st">'gray'</span>, ylim<span class="op">=</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fl">100</span><span class="op">)</span>,</span>
<span>    main<span class="op">=</span><span class="st">'% of places with at least x/12 indicators &gt;=Nth percentile'</span>,</span>
<span>     ylab<span class="op">=</span><span class="st">'% of places'</span>, xlab<span class="op">=</span><span class="st">'# of indicators'</span><span class="op">)</span></span>
<span>  <span class="fu"><a href="https://rdrr.io/r/graphics/points.html" class="external-link">points</a></span><span class="op">(</span><span class="va">xs</span>, <span class="fu"><a href="colcounter_summary_cum_pct.html">colcounter_summary_cum_pct</a></span><span class="op">(</span><span class="va">pdata</span>, <span class="fl">80</span><span class="op">)</span><span class="op">[</span><span class="va">xs</span><span class="op">+</span><span class="fl">1</span><span class="op">]</span>, type<span class="op">=</span><span class="st">'b'</span>, col<span class="op">=</span><span class="st">'blue'</span><span class="op">)</span></span>
<span>  <span class="fu"><a href="https://rdrr.io/r/graphics/points.html" class="external-link">points</a></span><span class="op">(</span><span class="va">xs</span>, <span class="fu"><a href="colcounter_summary_cum_pct.html">colcounter_summary_cum_pct</a></span><span class="op">(</span><span class="va">pdata</span>, <span class="fl">90</span><span class="op">)</span><span class="op">[</span><span class="va">xs</span><span class="op">+</span><span class="fl">1</span><span class="op">]</span>, type<span class="op">=</span><span class="st">'b'</span>, col<span class="op">=</span><span class="st">'orange'</span><span class="op">)</span></span>
<span>  <span class="fu"><a href="https://rdrr.io/r/graphics/points.html" class="external-link">points</a></span><span class="op">(</span><span class="va">xs</span>, <span class="fu"><a href="colcounter_summary_cum_pct.html">colcounter_summary_cum_pct</a></span><span class="op">(</span><span class="va">pdata</span>, <span class="fl">95</span><span class="op">)</span><span class="op">[</span><span class="va">xs</span><span class="op">+</span><span class="fl">1</span><span class="op">]</span>, type<span class="op">=</span><span class="st">'b'</span>, col<span class="op">=</span><span class="st">'red'</span><span class="op">)</span></span>
<span>  <span class="fu"><a href="https://rdrr.io/r/graphics/legend.html" class="external-link">legend</a></span><span class="op">(</span>x <span class="op">=</span> <span class="st">'topright'</span>, legend <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste0</a></span><span class="op">(</span><span class="st">'&gt;= '</span>, <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">50</span>, <span class="fl">80</span>, <span class="fl">90</span>, <span class="fl">95</span><span class="op">)</span>,<span class="st">'th percentile'</span><span class="op">)</span>,</span>
<span>   fill <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'gray'</span>, <span class="st">'blue'</span>, <span class="st">'orange'</span>, <span class="st">'red'</span><span class="op">)</span><span class="op">)</span></span>
<span></span>
<span>  <span class="co"># pdata &lt;- bg22[ ,  names.ej.pctile]</span></span>
<span>  <span class="fu"><a href="colcounter_summary_cum_pct.html">colcounter_summary_cum_pct</a></span><span class="op">(</span><span class="va">pdata</span>,<span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">50</span>,<span class="fl">80</span>,<span class="fl">90</span>,<span class="fl">95</span><span class="op">)</span><span class="op">)</span></span>
<span>  <span class="va">xs</span> <span class="op">&lt;-</span> <span class="fl">1</span><span class="op">:</span><span class="fl">12</span></span>
<span>  <span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span>x<span class="op">=</span><span class="va">xs</span>, y<span class="op">=</span><span class="fu"><a href="colcounter_summary_cum_pct.html">colcounter_summary_cum_pct</a></span><span class="op">(</span><span class="va">pdata</span>, <span class="fl">50</span><span class="op">)</span><span class="op">[</span><span class="va">xs</span><span class="op">+</span><span class="fl">1</span><span class="op">]</span>, </span>
<span>    type<span class="op">=</span><span class="st">'b'</span>, col<span class="op">=</span><span class="st">'gray'</span>, ylim<span class="op">=</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fl">40</span><span class="op">)</span>,</span>
<span>    main<span class="op">=</span><span class="st">'% of places with at least x/12 indicators &gt;=Nth percentile'</span>, ylab<span class="op">=</span><span class="st">'% of places'</span>, </span>
<span>    xlab<span class="op">=</span><span class="st">'# of indicators'</span><span class="op">)</span></span>
<span>  <span class="fu"><a href="https://rdrr.io/r/graphics/points.html" class="external-link">points</a></span><span class="op">(</span><span class="va">xs</span>, <span class="fu"><a href="colcounter_summary_cum_pct.html">colcounter_summary_cum_pct</a></span><span class="op">(</span><span class="va">pdata</span>, <span class="fl">80</span><span class="op">)</span><span class="op">[</span><span class="va">xs</span><span class="op">+</span><span class="fl">1</span><span class="op">]</span>, type<span class="op">=</span><span class="st">'b'</span>, col<span class="op">=</span><span class="st">'blue'</span><span class="op">)</span></span>
<span>  <span class="fu"><a href="https://rdrr.io/r/graphics/points.html" class="external-link">points</a></span><span class="op">(</span><span class="va">xs</span>, <span class="fu"><a href="colcounter_summary_cum_pct.html">colcounter_summary_cum_pct</a></span><span class="op">(</span><span class="va">pdata</span>, <span class="fl">90</span><span class="op">)</span><span class="op">[</span><span class="va">xs</span><span class="op">+</span><span class="fl">1</span><span class="op">]</span>, type<span class="op">=</span><span class="st">'b'</span>, col<span class="op">=</span><span class="st">'orange'</span><span class="op">)</span></span>
<span>  <span class="fu"><a href="https://rdrr.io/r/graphics/points.html" class="external-link">points</a></span><span class="op">(</span><span class="va">xs</span>, <span class="fu"><a href="colcounter_summary_cum_pct.html">colcounter_summary_cum_pct</a></span><span class="op">(</span><span class="va">pdata</span>, <span class="fl">95</span><span class="op">)</span><span class="op">[</span><span class="va">xs</span><span class="op">+</span><span class="fl">1</span><span class="op">]</span>, type<span class="op">=</span><span class="st">'b'</span>, col<span class="op">=</span><span class="st">'red'</span><span class="op">)</span></span>
<span>  <span class="fu"><a href="https://rdrr.io/r/graphics/legend.html" class="external-link">legend</a></span><span class="op">(</span>x <span class="op">=</span> <span class="st">'topright'</span>, legend <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste0</a></span><span class="op">(</span><span class="st">'&gt;= '</span>, <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">50</span>, <span class="fl">80</span>, <span class="fl">90</span>, <span class="fl">95</span><span class="op">)</span>,<span class="st">'th percentile'</span><span class="op">)</span>, </span>
<span>    fill <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">'gray'</span>, <span class="st">'blue'</span>, <span class="st">'orange'</span>, <span class="st">'red'</span><span class="op">)</span><span class="op">)</span></span>
<span><span class="op">}</span> <span class="co"># }</span></span>
<span></span></code></pre></div>
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